Skip to contents

Export Network Summary Statistics to Excel

Source: R/export_network_summary_statistics.R
export_network_summary_statistics.Rd

Writes the network_summary_statistics slot of a run_tkoi() result to an Excel workbook, with one sheet per node type (for example Gene, BiologicalProcess, Disease).

Usage

export_network_summary_statistics(tkoi_result, filename = "tkoi_result.xlsx")

Arguments

tkoi_result

A tKOIList object returned by run_tkoi().

filename

Path of the Excel file to write. An existing file is overwritten. Default "tkoi_result.xlsx".

Value

The path of the written file, invisibly, as returned by writexl::write_xlsx(). The function is called for its side effect of writing the workbook.

See also

export_gene_exploration_data() for a gene-level table.

Examples

if (FALSE) { # \dontrun{
expression_data = data.table::fread(
  system.file("extdata", "example_data.csv", package = "tkoi")
)

set.seed(1)
tkoi_result = run_tkoi(expression_data = expression_data)

path = export_network_summary_statistics(
  tkoi_result,
  filename = file.path(tempdir(), "tkoi_network_statistics.xlsx")
)
path
} # }